Genetic architecture of common bunt resistance in winter wheat using genome-wide association study.
Identifieur interne : 000193 ( Main/Exploration ); précédent : 000192; suivant : 000194Genetic architecture of common bunt resistance in winter wheat using genome-wide association study.
Auteurs : Amira M I. Mourad [États-Unis, Égypte] ; Ahmed Sallam [États-Unis, Égypte] ; Vikas Belamkar [États-Unis] ; Ezzat Mahdy [Égypte] ; Bahy Bakheit [Égypte] ; Atif Abo El-Wafaa [Égypte] ; P. Stephen Baenziger [États-Unis]Source :
- BMC plant biology [ 1471-2229 ] ; 2018.
Descripteurs français
- KwdFr :
- Annotation de séquence moléculaire (MeSH), Basidiomycota (physiologie), Déséquilibre de liaison (MeSH), Génotype (MeSH), Locus de caractère quantitatif (génétique), Maladies des plantes (immunologie), Maladies des plantes (microbiologie), Phénotype (MeSH), Résistance à la maladie (génétique), Triticum (génétique), Triticum (immunologie), Variation génétique (MeSH), Étude d'association pangénomique (MeSH).
- MESH :
- génétique : Locus de caractère quantitatif, Résistance à la maladie, Triticum.
- immunologie : Maladies des plantes, Triticum.
- microbiologie : Maladies des plantes.
- physiologie : Basidiomycota.
- Annotation de séquence moléculaire, Déséquilibre de liaison, Génotype, Phénotype, Variation génétique, Étude d'association pangénomique.
English descriptors
- KwdEn :
- Basidiomycota (physiology), Disease Resistance (genetics), Genetic Variation (MeSH), Genome-Wide Association Study (MeSH), Genotype (MeSH), Linkage Disequilibrium (MeSH), Molecular Sequence Annotation (MeSH), Phenotype (MeSH), Plant Diseases (immunology), Plant Diseases (microbiology), Quantitative Trait Loci (genetics), Triticum (genetics), Triticum (immunology).
- MESH :
- genetics : Disease Resistance, Quantitative Trait Loci, Triticum.
- immunology : Plant Diseases, Triticum.
- microbiology : Plant Diseases.
- physiology : Basidiomycota.
- Genetic Variation, Genome-Wide Association Study, Genotype, Linkage Disequilibrium, Molecular Sequence Annotation, Phenotype.
Abstract
BACKGROUND
Common bunt (caused by Tilletia caries and T. foetida) has been considered as a major disease in wheat (Triticum aestivum) following rust (Puccinia spp.) in the Near East and is economically important in the Great Plains, USA. Despite the fact that it can be easily controlled using seed treatment with fungicides, fungicides often cannot or may not be used in organic and low-input fields. Planting common bunt resistant genotypes is an alternative.
RESULTS
To identify resistance genes for Nebraska common bunt race, the global set of differential lines were inoculated. Nine differential lines carrying nine different genes had 0% infected heads and seemed to be resistant to Nebraska race. To understand the genetic basis of the resistance in Nebraska winter wheat, a set of 330 genotypes were inoculated and evaluated under field conditions in two locations. Out of the 330 genotypes, 62 genotypes had different degrees of resistance. Moreover, plant height, chlorophyll content and days to heading were scored in both locations. Using genome-wide association study, 123 SNPs located on fourteen chromosomes were identified to be associated with the resistance. Different degrees of linkage disequilibrium was found among the significant SNPs and they explained 1.00 to 9.00% of the phenotypic variance, indicating the presence of many minor QTLs controlling the resistance.
CONCLUSION
Based on the chromosomal location of some of the known genes, some SNPs may be associated with Bt1, Bt6, Bt11 and Bt12 resistance loci. The remaining significant SNPs may be novel alleles that were not reported previously. Common bunt resistance seems to be an independent trait as no correlation was found between a number of infected heads and chlorophyll content, days to heading or plant height.
DOI: 10.1186/s12870-018-1435-x
PubMed: 30424724
PubMed Central: PMC6234641
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Stephen Baenziger</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE</wicri:regionArea><placeName><region type="state">Nebraska</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2018">2018</date><idno type="RBID">pubmed:30424724</idno><idno type="pmid">30424724</idno><idno type="doi">10.1186/s12870-018-1435-x</idno><idno type="pmc">PMC6234641</idno><idno type="wicri:Area/Main/Corpus">000147</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000147</idno><idno type="wicri:Area/Main/Curation">000147</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000147</idno><idno type="wicri:Area/Main/Exploration">000147</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic architecture of common bunt resistance in winter wheat using genome-wide association study.</title><author><name sortKey="Mourad, Amira M I" sort="Mourad, Amira M I" uniqKey="Mourad A" first="Amira M I" last="Mourad">Amira M I. Mourad</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA. amira_mourad@aun.edu.eg.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE</wicri:regionArea><placeName><region type="state">Nebraska</region></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut, Egypt. amira_mourad@aun.edu.eg.</nlm:affiliation><country xml:lang="fr">Égypte</country><wicri:regionArea>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut</wicri:regionArea><wicri:noRegion>Asyut</wicri:noRegion></affiliation></author><author><name sortKey="Sallam, Ahmed" sort="Sallam, Ahmed" uniqKey="Sallam A" first="Ahmed" last="Sallam">Ahmed Sallam</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE</wicri:regionArea><placeName><region type="state">Nebraska</region></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Genetics, Faculty of Agriculture, Assiut University, Asyut, Egypt.</nlm:affiliation><country xml:lang="fr">Égypte</country><wicri:regionArea>Department of Genetics, Faculty of Agriculture, Assiut University, Asyut</wicri:regionArea><wicri:noRegion>Asyut</wicri:noRegion></affiliation></author><author><name sortKey="Belamkar, Vikas" sort="Belamkar, Vikas" uniqKey="Belamkar V" first="Vikas" last="Belamkar">Vikas Belamkar</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE</wicri:regionArea><placeName><region type="state">Nebraska</region></placeName></affiliation></author><author><name sortKey="Mahdy, Ezzat" sort="Mahdy, Ezzat" uniqKey="Mahdy E" first="Ezzat" last="Mahdy">Ezzat Mahdy</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut, Egypt.</nlm:affiliation><country xml:lang="fr">Égypte</country><wicri:regionArea>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut</wicri:regionArea><wicri:noRegion>Asyut</wicri:noRegion></affiliation></author><author><name sortKey="Bakheit, Bahy" sort="Bakheit, Bahy" uniqKey="Bakheit B" first="Bahy" last="Bakheit">Bahy Bakheit</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut, Egypt.</nlm:affiliation><country xml:lang="fr">Égypte</country><wicri:regionArea>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut</wicri:regionArea><wicri:noRegion>Asyut</wicri:noRegion></affiliation></author><author><name sortKey="Abo El Wafaa, Atif" sort="Abo El Wafaa, Atif" uniqKey="Abo El Wafaa A" first="Atif" last="Abo El-Wafaa">Atif Abo El-Wafaa</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut, Egypt.</nlm:affiliation><country xml:lang="fr">Égypte</country><wicri:regionArea>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut</wicri:regionArea><wicri:noRegion>Asyut</wicri:noRegion></affiliation></author><author><name sortKey="Stephen Baenziger, P" sort="Stephen Baenziger, P" uniqKey="Stephen Baenziger P" first="P" last="Stephen Baenziger">P. Stephen Baenziger</name><affiliation wicri:level="2"><nlm:affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE</wicri:regionArea><placeName><region type="state">Nebraska</region></placeName></affiliation></author></analytic><series><title level="j">BMC plant biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (physiology)</term><term>Disease Resistance (genetics)</term><term>Genetic Variation (MeSH)</term><term>Genome-Wide Association Study (MeSH)</term><term>Genotype (MeSH)</term><term>Linkage Disequilibrium (MeSH)</term><term>Molecular Sequence Annotation (MeSH)</term><term>Phenotype (MeSH)</term><term>Plant Diseases (immunology)</term><term>Plant Diseases (microbiology)</term><term>Quantitative Trait Loci (genetics)</term><term>Triticum (genetics)</term><term>Triticum (immunology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Annotation de séquence moléculaire (MeSH)</term><term>Basidiomycota (physiologie)</term><term>Déséquilibre de liaison (MeSH)</term><term>Génotype (MeSH)</term><term>Locus de caractère quantitatif (génétique)</term><term>Maladies des plantes (immunologie)</term><term>Maladies des plantes (microbiologie)</term><term>Phénotype (MeSH)</term><term>Résistance à la maladie (génétique)</term><term>Triticum (génétique)</term><term>Triticum (immunologie)</term><term>Variation génétique (MeSH)</term><term>Étude d'association pangénomique (MeSH)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Quantitative Trait Loci</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Locus de caractère quantitatif</term><term>Résistance à la maladie</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Maladies des plantes</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Plant Diseases</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetic Variation</term><term>Genome-Wide Association Study</term><term>Genotype</term><term>Linkage Disequilibrium</term><term>Molecular Sequence Annotation</term><term>Phenotype</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Annotation de séquence moléculaire</term><term>Déséquilibre de liaison</term><term>Génotype</term><term>Phénotype</term><term>Variation génétique</term><term>Étude d'association pangénomique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Common bunt (caused by Tilletia caries and T. foetida) has been considered as a major disease in wheat (Triticum aestivum) following rust (Puccinia spp.) in the Near East and is economically important in the Great Plains, USA. Despite the fact that it can be easily controlled using seed treatment with fungicides, fungicides often cannot or may not be used in organic and low-input fields. Planting common bunt resistant genotypes is an alternative.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>To identify resistance genes for Nebraska common bunt race, the global set of differential lines were inoculated. Nine differential lines carrying nine different genes had 0% infected heads and seemed to be resistant to Nebraska race. To understand the genetic basis of the resistance in Nebraska winter wheat, a set of 330 genotypes were inoculated and evaluated under field conditions in two locations. Out of the 330 genotypes, 62 genotypes had different degrees of resistance. Moreover, plant height, chlorophyll content and days to heading were scored in both locations. Using genome-wide association study, 123 SNPs located on fourteen chromosomes were identified to be associated with the resistance. Different degrees of linkage disequilibrium was found among the significant SNPs and they explained 1.00 to 9.00% of the phenotypic variance, indicating the presence of many minor QTLs controlling the resistance.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>Based on the chromosomal location of some of the known genes, some SNPs may be associated with Bt1, Bt6, Bt11 and Bt12 resistance loci. The remaining significant SNPs may be novel alleles that were not reported previously. Common bunt resistance seems to be an independent trait as no correlation was found between a number of infected heads and chlorophyll content, days to heading or plant height.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30424724</PMID><DateCompleted><Year>2018</Year><Month>12</Month><Day>18</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>18</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>18</Volume><Issue>1</Issue><PubDate><Year>2018</Year><Month>Nov</Month><Day>13</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Genetic architecture of common bunt resistance in winter wheat using genome-wide association study.</ArticleTitle><Pagination><MedlinePgn>280</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12870-018-1435-x</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Common bunt (caused by Tilletia caries and T. foetida) has been considered as a major disease in wheat (Triticum aestivum) following rust (Puccinia spp.) in the Near East and is economically important in the Great Plains, USA. Despite the fact that it can be easily controlled using seed treatment with fungicides, fungicides often cannot or may not be used in organic and low-input fields. Planting common bunt resistant genotypes is an alternative.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">To identify resistance genes for Nebraska common bunt race, the global set of differential lines were inoculated. Nine differential lines carrying nine different genes had 0% infected heads and seemed to be resistant to Nebraska race. To understand the genetic basis of the resistance in Nebraska winter wheat, a set of 330 genotypes were inoculated and evaluated under field conditions in two locations. Out of the 330 genotypes, 62 genotypes had different degrees of resistance. Moreover, plant height, chlorophyll content and days to heading were scored in both locations. Using genome-wide association study, 123 SNPs located on fourteen chromosomes were identified to be associated with the resistance. Different degrees of linkage disequilibrium was found among the significant SNPs and they explained 1.00 to 9.00% of the phenotypic variance, indicating the presence of many minor QTLs controlling the resistance.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">Based on the chromosomal location of some of the known genes, some SNPs may be associated with Bt1, Bt6, Bt11 and Bt12 resistance loci. The remaining significant SNPs may be novel alleles that were not reported previously. Common bunt resistance seems to be an independent trait as no correlation was found between a number of infected heads and chlorophyll content, days to heading or plant height.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Mourad</LastName><ForeName>Amira M I</ForeName><Initials>AMI</Initials><AffiliationInfo><Affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA. amira_mourad@aun.edu.eg.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut, Egypt. amira_mourad@aun.edu.eg.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sallam</LastName><ForeName>Ahmed</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Genetics, Faculty of Agriculture, Assiut University, Asyut, Egypt.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Belamkar</LastName><ForeName>Vikas</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mahdy</LastName><ForeName>Ezzat</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut, Egypt.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bakheit</LastName><ForeName>Bahy</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut, Egypt.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Abo El-Wafaa</LastName><ForeName>Atif</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Agronomy, Faculty of Agriculture, Assiut University, Asyut, Egypt.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Stephen Baenziger</LastName><ForeName>P</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Department of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, NE, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>11</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Plant Biol</MedlineTA><NlmUniqueID>100967807</NlmUniqueID><ISSNLinking>1471-2229</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055106" MajorTopicYN="Y">Genome-Wide Association Study</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015810" MajorTopicYN="N">Linkage Disequilibrium</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058977" MajorTopicYN="N">Molecular Sequence Annotation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName 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Mourad</name></region><name sortKey="Belamkar, Vikas" sort="Belamkar, Vikas" uniqKey="Belamkar V" first="Vikas" last="Belamkar">Vikas Belamkar</name><name sortKey="Sallam, Ahmed" sort="Sallam, Ahmed" uniqKey="Sallam A" first="Ahmed" last="Sallam">Ahmed Sallam</name><name sortKey="Stephen Baenziger, P" sort="Stephen Baenziger, P" uniqKey="Stephen Baenziger P" first="P" last="Stephen Baenziger">P. Stephen Baenziger</name></country><country name="Égypte"><noRegion><name sortKey="Mourad, Amira M I" sort="Mourad, Amira M I" uniqKey="Mourad A" first="Amira M I" last="Mourad">Amira M I. Mourad</name></noRegion><name sortKey="Abo El Wafaa, Atif" sort="Abo El Wafaa, Atif" uniqKey="Abo El Wafaa A" first="Atif" last="Abo El-Wafaa">Atif Abo El-Wafaa</name><name sortKey="Bakheit, Bahy" sort="Bakheit, Bahy" uniqKey="Bakheit B" first="Bahy" last="Bakheit">Bahy Bakheit</name><name sortKey="Mahdy, Ezzat" sort="Mahdy, Ezzat" uniqKey="Mahdy E" first="Ezzat" last="Mahdy">Ezzat Mahdy</name><name sortKey="Sallam, Ahmed" sort="Sallam, Ahmed" uniqKey="Sallam A" first="Ahmed" last="Sallam">Ahmed Sallam</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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